{ "_id": "6a1eddfab401979e73410224", "Package": "sequential.pops", "Type": "Package", "Title": "Sequential Analysis of Biological Population Sizes", "Version": "0.1.1", "Authors@R": "c(person(given = \"Diego F\", family = \"Rincon\",\nemail = \"diego.rincon@wsu.edu\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-6869-4430\")),\nperson(given = \"Izzy\", family = \"McCabe\",\nemail = \"israel.mcdonald@wsu.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0009-0004-5179-0345\")),\nperson(given = \"David W\", family = \"Crowder\",\nemail = \"dcrowder@wsu.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-3720-1581\")))", "Description": "In population management, data come at more or less\nregular intervals over time in sampling batches (bouts) and\ndecisions should be made with the minimum number of samples and\nas quickly as possible. This package provides tools to\nimplement, produce charts with stop lines, summarize results\nand assess sequential analyses that test hypotheses about\npopulation sizes. Two approaches are included: the sequential\ntest of Bayesian posterior probabilities (Rincon, D.F. et al.\n2025 ), and the sequential\nprobability ratio test (Wald, A. 1945\n).", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "License": "GPL (>= 3)", "URL": "https://github.com/rincondf/sequential.pops,\nhttps://rincondf.github.io/sequential.pops/", "BugReports": "https://github.com/rincondf/sequential.pops/issues", "VignetteBuilder": "knitr", "Repository": "https://rincondf.r-universe.dev", "Date/Publication": "2025-09-22 23:47:57 UTC", "RemoteUrl": "https://github.com/rincondf/sequential.pops", "RemoteRef": "HEAD", "RemoteSha": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 08:04:22 UTC", "User": "root" }, "Author": "Diego F Rincon [aut, cre, cph] (ORCID:\n),\nIzzy McCabe [aut] (ORCID: ),\nDavid W Crowder [aut] (ORCID: )", "Maintainer": "Diego F Rincon ", "MD5sum": "271c186f71a525cb2fda6e35c1d3b96a", "_user": "rincondf", "_type": "src", "_file": "sequential.pops_0.1.1.tar.gz", "_fileid": "adb3191a1528847f05b71dce5caccbbd17bf6055e8833229ef5484b3e995a80d", "_filesize": 1978950, "_sha256": "adb3191a1528847f05b71dce5caccbbd17bf6055e8833229ef5484b3e995a80d", "_created": "2026-05-20T08:04:22.000Z", "_published": "2026-06-02T13:43:22.296Z", "_distro": "noble", "_jobs": [ { "job": 79084822479, "time": 155, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7104537410" }, { "job": 79084822844, "time": 158, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7104538658" }, { "job": 79084823357, "time": 187, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7104537317" }, { "job": 79084822856, "time": 177, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7104533321" }, { "job": 79084822212, "time": 235, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7104486152" }, { "job": 79084821634, "time": 123, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7359418357" }, { "job": 79084822696, "time": 121, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7104526438" }, { "job": 79084822665, "time": 106, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7104521662" }, { "job": 79084822630, "time": 122, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7104527361" } ], "_buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rincondf/sequential.pops", "_commit": { "id": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "author": "Rincon ", "committer": "Rincon ", "message": "downloads per month badge added\n", "time": 1758584877 }, "_maintainer": { "name": "Diego F Rincon", "email": "diego.rincon@wsu.edu", "login": "rincondf", "description": "I'm an ecologist and data scientist interested in data-driven approaches to improve decision-making in pest management. ", "uuid": 127136605, "orcid": "0000-0001-6869-4430" }, "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "emdbook", "role": "Imports" }, { "package": "truncdist", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "rincondf", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-21", "n": 9 }, { "week": "2025-22", "n": 16 }, { "week": "2025-23", "n": 15 }, { "week": "2025-29", "n": 7 }, { "week": "2025-39", "n": 1 } ], "_tags": [ { "name": "v0.1.1", "date": "2025-06-03" } ], "_stars": 0, "_contributors": [ { "user": "rincondf", "count": 78, "uuid": 127136605 } ], "_userbio": { "uuid": 127136605, "type": "user", "name": "Diego Rincon", "description": "I'm an ecologist and data scientist interested in data-driven approaches to improve decision-making in pest management. " }, "_downloads": { "count": 158, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sequential.pops" }, "_devurl": "https://github.com/rincondf/sequential.pops", "_pkgdown": "https://rincondf.github.io/sequential.pops/", "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/sequential.pops.html", "manual.pdf" ], "_homeurl": "https://github.com/rincondf/sequential.pops", "_realowner": "rincondf", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2025-06-05" } ], "_exports": [ "int_eval", "int_eval2", "plot", "sprt", "SPRT.eval", "stbp_composite", "stbp_posterior_composite", "stbp_posterior_simple", "stbp_simple", "STBP.eval" ], "_help": [ { "page": "int_eval", "title": "Simulation of an STBP", "topics": [ "int_eval" ] }, { "page": "int_eval2", "title": "Simulation of an SPRT", "topics": [ "int_eval2" ] }, { "page": "plot-SPRT-missing-method", "title": "Draws a plot with the cumulative introduced counts contrasted with stop lines or stop lines when no data is provided", "topics": [ "plot,SPRT,missing-method" ] }, { "page": "plot-STBP-missing-method", "title": "Draws a plot with the sequence of posterior probabilities from a sequential test of Bayesian posterior probabilities", "topics": [ "plot", "plot,STBP,missing-method" ] }, { "page": "show-SPRT-method", "title": "Displays results from a \"SPRT\" object nicely", "topics": [ "show,SPRT-method" ] }, { "page": "show-STBP-method", "title": "Displays results from a \"STBP\" object nicely", "topics": [ "show", "show,STBP-method" ] }, { "page": "sprt", "title": "Sequential Probability Ratio Test", "topics": [ "sprt" ] }, { "page": "SPRT-class", "title": "Class \"SPRT\". Result of a Sequential Probability Ratio Test", "topics": [ "SPRT-class" ] }, { "page": "SPRT.eval", "title": "Evaluation of Sequential probability ratio tests", "topics": [ "SPRT.eval" ] }, { "page": "stbp_composite", "title": "Sequential test of Bayesian posterior probabilities for composite hypotheses", "topics": [ "stbp_composite" ] }, { "page": "stbp_posterior_composite", "title": "Posterior probability calculation for composite hypotheses", "topics": [ "stbp_posterior_composite" ] }, { "page": "stbp_posterior_simple", "title": "Posterior calculation for simple hypotheses about species absence", "topics": [ "stbp_posterior_simple" ] }, { "page": "stbp_simple", "title": "Sequential test of Bayesian posterior probabilities for simple hypotheses about species absence", "topics": [ "stbp_simple" ] }, { "page": "STBP-class", "title": "Class \"STBP\". Result of a Sequential tests of Bayesian posterior probabilities", "topics": [ "STBP-class" ] }, { "page": "STBP.eval", "title": "Evaluation of Sequential tests of Bayesian posterior probabilities", "topics": [ "STBP.eval" ] } ], "_pkglogo": "https://github.com/rincondf/sequential.pops/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/rincondf/sequential.pops/raw/HEAD/README.md", "_rundeps": [ "bbmle", "bdsmatrix", "coda", "emdbook", "evd", "lattice", "MASS", "Matrix", "mvtnorm", "numDeriv", "plyr", "Rcpp", "rlang", "truncdist" ], "_vignettes": [ { "source": "Seq-vignette.Rmd", "filename": "Seq-vignette.html", "title": "Sequential testing of hypotheses about population density with the sequential.pops package", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "1. The Sequential Test of Bayesian Posterior Probabilities", "Example 1: Testing species absence", "Example 2: Testing if a population is above a static threshold", "Test evaluation", "Example 3: Testing if a population is above a dynamic threshold", "2. The Sequential Probability Ratio Test", "Example 4: Testing if a population is above a threshold", "Wishlist for future versions", "Cited literature" ], "created": "2025-05-16 22:16:25", "modified": "2025-06-03 21:25:53", "commits": 17 } ], "_score": 4.3979400086720375, "_indexed": true, "_nocasepkg": "sequential.pops", "_universes": [ "rincondf" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-05-20T08:06:37.000Z", "distro": "noble", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "b788d0f757f981a6609adb48d9430892cef1886d322764467ed74667853c435a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-05-20T08:06:34.000Z", "distro": "noble", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "a422af63cbf25889f645482755bb7a82baf5c49119c45c069227793f67299898", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-05-20T08:06:38.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "d2447700ae6b1a2b375b207a8c2d36decf0268e8bd365ca41950f8d77122d2bd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-05-20T08:06:23.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "80f6122039d0b13d8b24d0ef53cc1ed4691d7e69a10d999301d625986e1d3c3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-05-20T08:05:48.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "ae945c62f4fc8f0c6b26b9b92c8e565bce53200c274a4efe4400471fc7f29f44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-05-20T08:05:41.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "4dbc4b6923dd08396104db9dba566a5611c73feff1a5dccdf28b46fcfdffd290", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-05-20T08:05:52.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "ed795125c7894f8e297b522d934981a8d1a107c8a51b2650d7703698dab5d799", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-06-02T13:43:00.000Z", "commit": "51ff2e0f20fcd63edc68f24196bee7254f70a631", "fileid": "9847444caca699630fe1a5445897c0b3a15c29f573eee5210d20182b95a36f21", "status": "success", "buildurl": "https://github.com/r-universe/rincondf/actions/runs/26149511531" } ] }